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Linking an \"Amino Acid\" instance to a \"Reference Sequence\" or \"Sequence Variant\" instance denotes the genomic context of the amino acid."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#AminoAcid","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Ancestral 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files."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#AncestralSequence","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AncestralSequence","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AncestralSequence/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AncestralSequence/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AncestralSequence/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AncestralSequence/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AncestralSequence/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AncestralSequence/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AncestralSequence/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AncestralSequence/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AncestralSequence","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Array 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At this stage, \"Quality\" is the only direct subclass of \"Attribute\", whose subclasses denote qualitative properties such as sex (\"Female\", \"Male\", \"Hermaphrodite\"), zygosity (\"Hemizygous\", \"Heterozygous\", \"Homozygous\"), etc.\n\nThe object property \"has quality\" (or subproperties thereof) should be utilized to express qualities of entities. The \"hasAttribute\" object property should be used to denote relationships to \"Object\" or \"Process\" instances, unless there is a better object property suitable to represent the relationship between 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Genomic material itself is represented as subclasses of \"Chemical 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These alterations are typically insertions, deletions or translocations according to the GVF specification (see \"Breakpoint_detail\" in http://sequenceontology.org/resources/gvf.html). Breakpoint coordinates should be provided using classes of the Feature Annotation Location Description Ontology.\n\nThe class encodes for the \"Breakpoint_detail\" and \"Breakpoint_range\" attributes in GVF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#Breakpoint","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Catalog","definition":["A catalog is a specialization of a \"Collection\", where all of its contents are of the same type. The requirement of same type cannot be enforced formally via this ontology; data providers need to verify this condition manually or programmatically, or alternatively, use the more generic \"Collection\" class instead."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#Catalog","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Cell","definition":["A cell is a biological unit that in itself forms a living organism or is part of a larger organism that is composed of many other cells. The subclasses \"Germline Cell\" and \"Somatic Cell\" can be used to denote the biological material that was used in an experiment."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#Cell","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Chemical Entity","definition":["A chemical entity is an entity related to biochemistry. This class is typically not instantiated, but instead, its subclasses \"Amino Acid\", \"Chromosome\", \"Peptide Sequence\", etc., are used to represent specific chemical entities."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#ChemicalEntity","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Chromosome","definition":["A chromosome can be used as an abstract representation of a (not necessarily named) chromosome to represent ploidy within a data set. The \"Chromosome\" instance is then used for for denoting the locus of phased genotypes.\n\nFor placing genomic features (\"Feature\" class instances) on a chromosome, contig, scaffold, etc., please see the \"Landmark\" class. It is encouraged that Sequence Ontology terms are used to annotate a Landmark with a biological type (s.a. \"chromosome\", \"contig\", etc.).\n\nEncodes for \"sequencing-scope\" pragma in GVF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#Chromosome","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Circular Helix","definition":["A circular helix structure.\n\nCan be used to indicate a true \"Is_circular\" attribute in GFF3 and GVF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#CircularHelix","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CircularHelix","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CircularHelix/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CircularHelix/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CircularHelix/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CircularHelix/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CircularHelix/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CircularHelix/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CircularHelix/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CircularHelix/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CircularHelix","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Coding Frame Offset","definition":["Coding frame offset of a genomic feature that is a coding sequence or other genomic feature that contributes to transcription and translation. A feature's coding frame offset can be either 0, 1, or 2.\n\nIt is referred to as \"frame\" in GTF, but called \"phase\" in GFF3 and GVF. \"phase\" is defined in GVF, but unused."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#CodingFrameOffset","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodingFrameOffset","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodingFrameOffset/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodingFrameOffset/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodingFrameOffset/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodingFrameOffset/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodingFrameOffset/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodingFrameOffset/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodingFrameOffset/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodingFrameOffset/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodingFrameOffset","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Codon Sequence","definition":["A codon sequence is a nucleotide sequence underlying a potential amino acid sequence. Codon sequences are three bases of length or multiples thereof.\n\nEncodes for \"Variant_codon\" and \"Reference_codon\" attributes in GVF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#CodonSequence","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Collection","definition":["A collection is a container for genomic data. A collection may contain information about genomic data including -- but not limited to -- contents of GFF3, GTF, GVF and VCF files. The latter are better represented by \"File\" class instances, whereas the result of unions or intersections between different \"File\" class instances should be captured within this format-independent \"Collection\" class. When importing data whose provenance is not file based, instances of \"Collection\" should be utilized (e.g., database exports)."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#Collection","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Comment","definition":["A comment is a remark about a piece of information, an observation or statement. In the context of GFF3, GVF, etc., genomic feature and variation descriptions, \"isAfter\" and \"isBefore\" relationships should be used to indicate where a comment is situated between pragma or feature statements of GFF3, GTF, GVF or VCF files.\n\nFor specific descriptions or textual annotations of genomic features, the use of the \"Note\" class is encouraged."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#Comment","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Conditional Genotype Quality","definition":["Conditional genotype quality expressed in form of a \"Phred Score\". It denotes the score of the genotype being wrong under the assumption/condition that the genomic site is a sequence variant.\n\nEncodes for \"GQ\" additional information in VCF files."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#ConditionalGenotypeQuality","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Contig","definition":["A contig is a contiguous DNA sequence that has been assembled from shorter overlapping DNA segments. \"Contig\" is a specialization of a \"Collection\" and should be used to aggregate features, but not for indicating that a \"Landmark\" is representing a contig. It is encouraged that the latter is annotated by a term of the Sequence Ontology.\n\nEncodes for \"sequencing-scope\" in GVF and the \"contig\" information field in VCF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#Contig","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Coverage","definition":["Number of nucleic acid sequence reads for a particular genomic locus (a region or single base pair).\n\nAccounts for \"DP\" additional information in VCF files."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#Coverage","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"DNA Microarray","definition":["Feature information is based on DNA microarray probes.\n\nUsed by the \"data-source\" structured pragma in GVF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#DNAMicroarray","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNAMicroarray","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNAMicroarray/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNAMicroarray/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNAMicroarray/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNAMicroarray/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNAMicroarray/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNAMicroarray/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNAMicroarray/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNAMicroarray/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNAMicroarray","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"DNA Sequence","definition":["A DNA sequence is a sequence of nucleic acids.\n\nIt can be used to describe \"FASTA\" annotations in both GFF3 and GVF files as well as short sequences in VCF files."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#DNASequence","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"DNA Sequencing","definition":["Information about features and variants is based on DNA sequencing.\n\nUsed by the \"data-source\" structured pragma in GVF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#DNASequencing","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequencing","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequencing/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequencing/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequencing/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequencing/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequencing/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequencing/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequencing/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequencing/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequencing","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Exome","definition":["Representation of an exome. Features that constitute the exome may be linked via one or more \"Collection\", \"Catalog\", \"Contig\", \"Scaffold\" or \"File\" instances.\n\n\"Exome\" can be used for describing data contents of the \"sequencing-scope\" pragma in GVF files."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#Exome","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Experimental Method","definition":["An experimental method is a procedure that yields an experimental outcome (result). Experimental methods can be in vivo, in vitro or in silico procedures that are well described and can be referenced.\n\nEncodes for \"source\" column contents of GFF3, GTF, and GVF file formats as well as the \"CHROM\" column in VCF. Can be used to describe the \"capture-method\" pragma in GVF; it can describe \"VALIDATED\" additional information in VCF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#ExperimentalMethod","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExperimentalMethod","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExperimentalMethod/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExperimentalMethod/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExperimentalMethod/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExperimentalMethod/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExperimentalMethod/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExperimentalMethod/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExperimentalMethod/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExperimentalMethod/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExperimentalMethod","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"External Reference","definition":["A cross-reference to associate an entity to a representation in another database.\n\nEncodes for the \"Dbxref\" attribute in GFF3 and GVF. Can be used to describe the contents of the \"source\" column in GTF files. Captures the \"genome-build\" pragma, \"source-method\", \"attribute-method\", \"phenotype-description\", and \"phased-genotypes\" structured pragmas in GVF. Accounts for the \"assembly\" and \"pedigreeDB\" information fields, and \"DB\", \"H2\", \"H3\", \"1000G\" additional information in VCF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#ExternalReference","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Feature","definition":["The feature class captures information about genomic sequence features and variations. A genomic feature can be a large object, such as a chromosome or contig, down to single base-pair reference or variant alleles."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#Feature","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Female","definition":["Denoting sex of a female individual, who is defined as an individual producing ova.\n\nThis quality can be used to encode for the \"sex\" pragma in GVF files."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#Female","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Female","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Female/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Female/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Female/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Female/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Female/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Female/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Female/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Female/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Female","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"File","definition":["A file represents the contents of a GFF3, GTF, GVF or VCF file. It can capture genomic meta-data that is specific to any of these file formats. The result of unions, intersections or other operations between \"File\" class instances should be capture with the generic \"Collection\" class, which is format independent."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#File","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Forward Reference Sequence Frameshift","definition":["Denotes a frameshift forward in the reference sequence.\n\nEncodes for the \"Target\" attribute in GFF3, encodes for \"Target\" attribute and \"sequence-alignment\" pragma in GVF, and, encodes \"CIGAR\" additional information in VCF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#ForwardReferenceSequenceFrameshift","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ForwardReferenceSequenceFrameshift","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ForwardReferenceSequenceFrameshift/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ForwardReferenceSequenceFrameshift/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ForwardReferenceSequenceFrameshift/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ForwardReferenceSequenceFrameshift/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ForwardReferenceSequenceFrameshift/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ForwardReferenceSequenceFrameshift/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ForwardReferenceSequenceFrameshift/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ForwardReferenceSequenceFrameshift/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ForwardReferenceSequenceFrameshift","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Fragment Read Platform","definition":["Details about the fragment-read (single-end read) sequencing technology used to gather the data in a set.\n\nEncodes for the \"technology-platform-read-type\" pragma in GVF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#FragmentReadPlatform","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FragmentReadPlatform","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FragmentReadPlatform/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FragmentReadPlatform/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FragmentReadPlatform/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FragmentReadPlatform/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FragmentReadPlatform/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FragmentReadPlatform/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FragmentReadPlatform/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FragmentReadPlatform/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FragmentReadPlatform","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Functional Specification","definition":["A functional specification of bioinformatics data, i.e. the specification of genomic material that potentially has biological function. This class should not be directly instantiated, but instead, its subclass \"Genotype\" should be used."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#FunctionalSpecification","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Gametic Phase","definition":["Denotes the presence of information that required capturing the gametic phase. For diploid organisms, this quality indicates that information is available about which chromosome of a chromosome pair contributed data.\n\n\"Gametic Phase\" encodes for the \"Phase\" attribute in GVF. It encodes for \"GT\" and \"PS\" additional information in VCF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#GameticPhase","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GameticPhase","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GameticPhase/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GameticPhase/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GameticPhase/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GameticPhase/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GameticPhase/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GameticPhase/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GameticPhase/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GameticPhase/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GameticPhase","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Genome","definition":["Representation of a genome. Genomic features that constitute the genome may be linked via one or more \"Collection\", \"Catalog\", \"Contig\", \"Scaffold\" or \"File\" instances.\n\n\"Genome\" can be used for describing data contents of the \"genome-build\" and \"sequencing-scope\" pragmas in GVF files."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#Genome","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Genome Analysis","definition":["A genome analysis denotes the type of procedure that was carried out to derive information from a genome assembly.\n\n\"Genome Analysis\" can be instantiated for cases where an application of \"FILTER\" in VCF cannot be linked to \"Genotyping\" or \"Variant Calling\", which are subclasses of \"Genome Analysis\". If possible, further annotation should be provided to indicate the actually utilized filter type."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#GenomeAnalysis","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomeAnalysis","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomeAnalysis/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomeAnalysis/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomeAnalysis/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomeAnalysis/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomeAnalysis/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomeAnalysis/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomeAnalysis/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomeAnalysis/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomeAnalysis","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Genomic Ascertaining Method","definition":["Provides information about the source of data.\n\nSubclasses of the class can be used to encode for the \"data-source\" structured pragma in GVF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#GenomicAscertainingMethod","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomicAscertainingMethod","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomicAscertainingMethod/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomicAscertainingMethod/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomicAscertainingMethod/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomicAscertainingMethod/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomicAscertainingMethod/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomicAscertainingMethod/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomicAscertainingMethod/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomicAscertainingMethod/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GenomicAscertainingMethod","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Genotype","definition":["The genotype is the genetic information captured in a particular genome. It can also refer to one or more populations, if statistical distributions are provided that assign genetic codes to groups of individuals.\n\nA genotype is denoted by a string of slash-separated list of alleles (\"has value\" property). The length of the list is dependent on the ploidy of the studied species as well as sequencing technique used.\n\nExample: \"A/G\" denotes a genotype with alleles \"A\" and \"G\".\n\nEncodes for the \"Genotype\" attribute in GVF and \"GT\" additional information in VCF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#Genotype","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Genotyping","definition":["Genotyping is the process of determining the genetics of an individual or sample. The genotype itself is expressed as the difference of genetic mark-up compared to a reference genome.\n\nApplicable to the \"FILTER\" information field in VCF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#Genotyping","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotyping","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotyping/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotyping/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotyping/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotyping/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotyping/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotyping/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotyping/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotyping/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotyping","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Germline Cell","definition":["The germline feature class captures information about genomic sequence features arising from germline cells.\n\nVCF files permit the explicit annotation with \"Somatic Cell\" via \"SOMATIC\" additional information. The absence of that field does not imply the presence of germine cell material though. Describes the \"genomic-source\" pragma in GVF."],"obsolete":false,"matchType":"prefLabel","ontologyType":"ONTOLOGY","@id":"http://www.biointerchange.org/gfvo#GermlineCell","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell","ontology":"https://data.agroportal.eu/ontologies/GFVO","children":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/children","parents":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/parents","descendants":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/descendants","ancestors":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/ancestors","instances":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/instances","tree":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/tree","notes":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/notes","mappings":"https://data.agroportal.eu/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/mappings","ui":"http://agroportal.eu/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","@language":"en"}},{"prefLabel":"Haplotype","definition":["A \"Haplotype\" is a collection of \"Genotype\" or \"Sequence Variant\" instances. It can imply that a set of genes is inherited as a group, or alternatively, that the set of genotypes or sequence variance has a biological function when acting together (e.g., there exists a disease association).\n\nHaplotype instances should only catalog a single type, i.e. either \"Genotype\" or \"Sequence Variant\" instances; they should not mix both types (see also \"Catalog\").\n\nEncodes for \"HQ\" additional information in 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